loadScript ../../../spectra/jsmol/j2s/core/package.js
loadScript ../../../spectra/jsmol/j2s/core/corejmol.z.js
loadScript ../../../spectra/jsmol/j2s/core/corescript.z.js
JSmol exec jmolApplet0 start applet null
Jmol JavaScript applet jmolApplet0__824499043268009__ initializing
Jmol getValue debug null
Jmol getValue logLevel null
Jmol getValue allowjavascript true
AppletRegistry.checkIn(jmolApplet0__824499043268009__)
CIR resolver set to https://cactus.nci.nih.gov/chemical/structure
vwrOptions:
{ "name":"jmolApplet0","applet":true,"documentBase":"https://212233.hqzbsc.asia/courses/CHEM2402/Crime/Toxicity.html","platform":"J.awtjs2d.Platform","allowjavascript":true,"fullName":"jmolApplet0__824499043268009__","codePath":"https://212233.hqzbsc.asia/courses/CHEM2402/Crime/../../../spectra/jsmol/j2s/","display":"jmolApplet0_canvas2d","signedApplet":"true","appletReadyCallback":"Jmol._readyCallback","statusListener":"[J.appletjs.Jmol object]","syncId":"824499043268009","bgcolor":"#F0F0F0" }
setting document base to "https://212233.hqzbsc.asia/courses/CHEM2402/Crime/Toxicity.html"
(C) 2015 Jmol Development
Jmol Version: 14.31.61 2021-11-11 13:37
java.vendor: Java2Script (HTML5)
java.version: 2021-05-26 21:16:02 (JSmol/j2s)
os.name: Mozilla/5.0 AppleWebKit/537.36 (KHTML, like Gecko; compatible; ClaudeBot/1.0; +claudebot@anthropic.com)
Access: ALL
memory: 0.0/0.0
processors available: 1
useCommandThread: false
appletId:jmolApplet0 (signed)
Jmol getValue emulate null
defaults = "Jmol"
Jmol getValue boxbgcolor null
Jmol getValue bgcolor #F0F0F0
backgroundColor = "#F0F0F0"
Jmol getValue ANIMFRAMECallback null
Jmol getValue APPLETREADYCallback Jmol._readyCallback
APPLETREADYCallback = "Jmol._readyCallback"
StatusManager callback set for APPLETREADYCallback f=Jmol._readyCallback cb=APPLETREADY
Jmol getValue ATOMMOVEDCallback null
Jmol getValue AUDIOCallback null
Jmol getValue CLICKCallback null
Jmol getValue DRAGDROPCallback null
Jmol getValue ECHOCallback null
Jmol getValue ERRORCallback null
Jmol getValue EVALCallback null
Jmol getValue HOVERCallback null
Jmol getValue IMAGECallback null
Jmol getValue LOADSTRUCTCallback null
Jmol getValue MEASURECallback null
Jmol getValue MESSAGECallback null
Jmol getValue MINIMIZATIONCallback null
Jmol getValue SERVICECallback null
Jmol getValue PICKCallback null
Jmol getValue RESIZECallback null
Jmol getValue SCRIPTCallback null
Jmol getValue SYNCCallback null
Jmol getValue STRUCTUREMODIFIEDCallback null
Jmol getValue doTranslate null
language=en_US
Jmol getValue popupMenu null
Jmol getValue script null
Jmol getValue loadInline null
Jmol getValue load null
Jmol applet jmolApplet0__824499043268009__ ready
script 1 started
FileManager.getAtomSetCollectionFromFile(https://212233.hqzbsc.asia/courses/CHEM2402/Crime/amanitin.mol)
FileManager opening url https://212233.hqzbsc.asia/courses/CHEM2402/Crime/amanitin.mol
The Resolver thinks Mol
alpha-amanitin C39H54N10O14S
RLDSViewer 3D 0
http://wwwchem.uwimona.edu.jm/courses/CHEM2402
alpha-amanitin C39H54N10O14S
Time for openFile(https://212233.hqzbsc.asia/courses/CHEM2402/Crime/amanitin.mol): 105 ms
reading 118 atoms
ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false
1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.
Default Van der Waals type for model set to Babel
118 atoms created
ModelSet: not autobonding; use forceAutobond=true to force automatic bond creation
Time for creating model: 3 ms
alpha-amanitin C39H54N10O14S
Script completed
Jmol script terminated
Time for openFile(https://212233.hqzbsc.asia/courses/CHEM2402/Crime/ricin.pdb): 1267 ms
reading 4440 atoms
ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false
1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.
Default Van der Waals type for model set to Jmol
4440 atoms created
ModelSet: autobonding; use autobond=false to not generate bonds automatically
Jmol 14.31.61 2021-11-11 13:37 DSSP analysis for model 1.1 - null
W. Kabsch and C. Sander, Biopolymers, vol 22, 1983, pp 2577-2637
We thank Wolfgang Kabsch and Chris Sander for writing the DSSP software,
and we thank the CMBI for maintaining it to the extent that it was easy to
re-engineer in Java for our purposes.
Second generation DSSP 2.0 is used in this analysis. See Int. J. Mol. Sci. 2014, 15, 7841-7864; doi:10.3390/ijms15057841.
All bioshapes have been deleted and must be regenerated.
Time for creating model: 170 ms
waitForMoveTo = false
defaultStructureDssp = true
measurementUnits = "angstroms"
4440 atoms selected
168 atoms selected
4440 atoms selected
antialiasDisplay = true
loadScript ../../../spectra/jsmol/j2s/JV/StateCreator.js
loadScript ../../../spectra/jsmol/j2s/JV/JmolStateCreator.js
loadScript ../../../spectra/jsmol/j2s/core/coretext.z.js
Script completed
Jmol script terminated
loadScript ../../../spectra/jsmol/j2s/J/g3d/HermiteRenderer.js